Gene Codes announces the release of Sequencher 5.4. This new release adds features to Sanger, NGS and RNA-Seq analyses such as:

Expanded Cufflinks suite with the addition of Cuffquant and Cuffnorm. Sequencher 5.4 also has replicates functionality with a unique Conditions and Replicates Editor for Cuffdiff and Cuffnorm.

Enhanced RNA-Seq visualizations with custom sorting and filtering options.

View and save quality scores and metadata of your NGS raw data files with FastQC reports.

Generate Variant Calling Files (VCF) to flag variants in your NGS alignments using SAMtools.

Updated version of GSNAP which runs faster and has additional alignment modes.

An updated External Data Browser for organizing both DNA-Seq and RNA-Seq projects.

Sequencher Connections has improved organization and usability.